Researchers used array-based SNP markers to map the genetic diversity of 828 repatriated Indian wheat landraces and build a ...

This course will enable you to analyse large-scale genetic data using standard analytical approaches and freely available software tools. The course will cover statistical background for association ...

Genome-wide association studies (GWAS) are crucial for identifying numerous single nucleotide polymorphisms (SNPs) linked to various diseases. However, current methods struggle with regional ...

Datasets collected in neuroscientific studies are of ever-growing complexity, often combining high-dimensional time series data from multiple data acquisition modalities. Handling and manipulating ...

An array-based genotyping approach has been the standard practice for genome-wide association studies (GWASs); however, as sequencing costs plummet over the past years, ultra low-coverage whole-genome ...

Lamella micromachining by focused ion beam milling at cryogenic temperature (cryo-FIB) has matured into a preparation method widely used for cellular cryo-electron tomography. Due to the limited ...

python munge_sumstats.py --sumstats GIANT_BMI_Speliotes2010_publicrelease_HapMapCeuFreq.txt\ --merge-alleles w_hm3.snplist --out BMI\ --a1-inc This will give you a file called BMI.sumstats.gz. The ...

SAMtools and BCFtools are widely used programs for processing and analysing high-throughput sequencing data. They include tools for file format conversion and manipulation, sorting, querying, ...

We compared the performance of two commonly used genotyping platforms, genotyping-by-sequencing (GBS) and single nucleotide polymorphism-arrays (SNP), to investigate the extent and pattern of genetic ...